HMMerThread Database of remotely conserved domains

Bradshaw C. R., Surendranath V., Henschel R., Mueller M. and Habermann B. Genome Research (Submitted)

Search: Select Genome:    H. sapiens M. musculus D. melanogaster D. rerio C. elegans S. cerevisae S. pombe Enter Query (Gene Name) Enter Protein ID (or Clone ID for C.elegans) Enter Pfam Domain Include Sequence Based Domains (from Pfam) Include Non-Pfam Sequence Based Domains (from InterPro)

News 20th October 2009: HMMerThread Database is now available at http://hmmerthread.mpi-cbg.de 10th October 2009: Live Search Feature is Available: Live Search HMMerThread DB Statistics: Genome Total Proteins Total Domain Hits Total Weak Hits (e > 1) Total Validated H. sapiens 33,466 23,151 12,038 1,031 (4,492) M. musculus 34,981 22,037 11,460 636 (3,541) C. elegans 23,518 13,709 7,664 (1,741) D. melanogaster 19,388 13,709 7,430 249 (1,075) D. rerio 29,720 23,251 11,422 (1,728) S. cerevisiae 5,868 3,117 1,919 41 (360) S. pombe 5,004 2,761 1,506 - D. discoideum 13,501 8,176 4,891 - TOTAL 165,446 109,570 58,330 1,957(12,937)

Developed at the MPI-CBG Dresden, Germany, Please mail bradshaw@mpi-cbg.de for details